PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof013963

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24052.8 Da PI: 6.7992

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17420967	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.8e-19	74	127	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k Sof013963 74 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 127 4557899**********************************************9 PP
2	HD-ZIP_I/II	126.7	1e-40	73	165	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal++e ++L++++++L++e++e Sof013963 73 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIERDFAALRARHDALRAECDALRRDKDALAAEIRE 165 69**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.471	69	129	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.88E-18	69	131	IPR009057	Homeodomain-like
SMART	SM00389	6.0E-19	72	133	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-16	74	127	IPR001356	Homeobox domain
CDD	cd00086	7.28E-15	74	130	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.3E-19	80	128	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	104	127	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.7E-14	129	168	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MKRPTSRGSS MVSGQAATDQ QEDSCRYMER HGGVNGSDGT AAAERDDLDA GAYEYDEEDE 60 EEELAGCRGG LGEKKRRLAA DQVRALERSF EVDNKLDPER KARIARDLSL HPRQVAVWFQ 120 NRRARWKTKQ IERDFAALRA RHDALRAECD ALRRDKDALA AEIRELKEGG EKQMEAKLES 180 AEELLAGLDE DSGGRPSRRT KLTLRGLAKK KALL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	129	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792352.1	1e-100	homeobox-leucine zipper protein HOX8-like isoform X1
Swissprot	Q338Z7	1e-59	HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBL	A0A3L6SDJ8	2e-99	A0A3L6SDJ8_PANMI; Homeobox-leucine zipper protein HOX8-like isoform X1
STRING	Pavir.J35191.1.p	1e-100	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	3e-28	homeobox protein 16

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]