PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013964
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 214aa    MW: 22436.1 Da    PI: 10.8886
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17424904PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-202979256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
               + +GVr ++ +gr++AeIrdp     r +r++lg+f+t+e+Aa+a++aa+++l+g+
  Sof013964 29 RLRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTPEQAARAYDAAARRLRGP 79
               679******.**********8...2.35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-142878IPR001471AP2/ERF domain
CDDcd000186.04E-152885No hitNo description
PROSITE profilePS5103223.4062986IPR001471AP2/ERF domain
SMARTSM003802.1E-312992IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-212987IPR016177DNA-binding domain
PRINTSPR003671.2E-93041IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-303186IPR001471AP2/ERF domain
PRINTSPR003671.2E-95268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAPKGWTMSP PVNTSSSSGG GERAAEQPRL RGVRKRPWGR YAAEIRDPAR KARVWLGTFD  60
TPEQAARAYD AAARRLRGPR ATTNYPAPAP APVASASGSS AVEESPSSST SGRDDSSLAA  120
ISAGSVVDDV GAARDRDAGA GAAAVLAAEE RGRAKLLRAV VVGVVVCGAG GLWGFFDLKP  180
GLRPVERVTE QPKKGHDTHR WNSPVSPLFV VDQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-202586163ATERF1
3gcc_A7e-202586163ATERF1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.164940.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023771297.12e-28ethylene-responsive transcription factor 4
STRINGBostr.3148s0037.1.p1e-27(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.13e-18ERF domain protein 11