PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof014107

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRAS

Protein Properties

Length: 212aa MW: 22871.9 Da PI: 6.2977

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-49070	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	124.7	1.1e-38	2	192	98	300
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rv 196 + qa+l+++ g++r+H++Df+ ++G Q ++L+++La+R ++++l++T+++s++s++ el+ ++e+L+ fA+elgv ++f v+ ++++l++ eL ++ Sof014107 2 CVQAVLDELGGASRIHVLDFETGMGEQRATLMHELAQR-CPAATLKVTALVSSASHHPLELNLIHENLSGFARELGVFLQFAVF---NIDTLDPAELvAI 97 579********************************9.7889************************************9...9999999999455 PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +g+++aV+l + ++ + ++vL+lvk+l +kvvv v++ +d+++ +F++++++a++ +++l+ds++a ++++e+ + r+l +++++ Sof014107 98 TSGDTVAVHLPVGSAHVA--------AMPAVLRLVKRLGAKVVVSVDRGCDRTELPFAAHLFQAFQSCVSLLDSVDAV-GTDAEAVARNQRFLGQPDVEL 188 66*******99998........4566*******************************************887.566666666666666666665 PP GRAS 297 vvac 300 v Sof014107 189 RVVR 192 5544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.169	1	212	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-36	2	192	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
XCVQAVLDEL GGASRIHVLD FETGMGEQRA TLMHELAQRC PAATLKVTAL VSSASHHPLE 60 LNLIHENLSG FARELGVFLQ FAVFNIDTLD PAELVAITSG DTVAVHLPVG SAHVAAMPAV 120 LRLVKRLGAK VVVSVDRGCD RTELPFAAHL FQAFQSCVSL LDSVDAVGTD AEAVARNQRF 180 LGQPDVELRV VRANARWSWN NPPTLAWRNG FA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464970.1	1e-118	scarecrow-like protein 6
TrEMBL	C5WSJ8	1e-117	C5WSJ8_SORBI; Uncharacterized protein
STRING	Sb01g029650.1	1e-118	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-37	GRAS family protein