PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014126
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GeBP
Protein Properties Length: 212aa    MW: 23813.2 Da    PI: 9.8204
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-75805PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57336.11.8e-1131118396
     DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                fqr ws  De  +L +l   + ++g+ p+   d + + + ++++ +  s s+l  K+++L+ +++k vkk   g     sk+hd+  f+l k +W
  Sof014126  31 FQRTWSTGDEFRILEALAAHRLEHGTLPQT--DVLANALAGKLDnSGCSLSELQRKVKSLQSRYTKAVKK---GA--PPSKDHDRRLFDLFKNVW 118
                9************************87665..567777877776257999********************...44..46799************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.0E-1731118IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
EEEAGDELFL TKPAPNQEMG AKGAKRPSAP FQRTWSTGDE FRILEALAAH RLEHGTLPQT  60
DVLANALAGK LDNSGCSLSE LQRKVKSLQS RYTKAVKKGA PPSKDHDRRL FDLFKNVWPS  120
VTKAPTKAAA NSGAGREPDE MCELYPYLAE EVKALQKAHP GLFKREFAMI DDSKARALDE  180
KIKKQRHLQM RLHLRRHDLT KEVTKTLMDL AE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.38731e-159bud| crown| inflorescence| leaf| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141816.11e-122uncharacterized protein LOC100273955
TrEMBLC5XTG91e-123C5XTG9_SORBI; Uncharacterized protein
STRINGSb04g034490.11e-124(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.14e-07DNA-binding storekeeper protein-related transcriptional regulator