PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof014133

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 212aa MW: 24237.5 Da PI: 9.6762

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-87761	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.3e-17	48	92	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Sof014133 48 GRMSPHEERLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 92 89*****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-9	27	54	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.426	27	41	IPR017877	Myb-like domain
SuperFamily	SSF46689	4.08E-22	27	101	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.302	42	96	IPR017930	Myb domain
SMART	SM00717	4.2E-16	46	94	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-15	48	91	IPR001005	SANT/Myb domain
CDD	cd00167	3.10E-12	49	92	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-20	55	93	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
XKVANINVFL SNQPSSYYVL YVHAGLNRTG KSCRLRWVNY LHPGLKHGRM SPHEERLIIE 60 LHARWGNRWS RIARRLPGRT DNEIKNYWRT HMRKKAQERK MSMSSPSSSS SSLTYQACLL 120 DTVPVTGMGS ADTHNGSCVT SALENTQSAM DGYPMDQIWK AIEAPQAPAL LGIAERKEKT 180 CSSIPCHLPS PAMWDYKYSE VFWKKEDQEI MM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-18	14	96	24	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	6e-18	14	96	78	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	6e-18	14	96	78	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-18	14	96	24	105	C-Myb DNA-Binding Domain
1msf_C	2e-18	14	96	24	105	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.9065	0.0	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317161.1	1e-120	myb-related protein MYBAS1
Swissprot	Q53NK6	2e-92	MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBL	C3S3G1	1e-122	C3S3G1_SACOF; MYB transcription factor MYBAS1
TrEMBL	F2W403	1e-122	F2W403_9POAL; MYB transcription factor variant 1
STRING	GRMZM2G048136_P02	1e-117	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.2	2e-48	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]