PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014159
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family CPP
Protein Properties Length: 212aa    MW: 23305.4 Da    PI: 8.4926
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17329220PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR53.74.1e-175190140
        TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
               ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN  
  Sof014159 51 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNAF 90
               589***********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163423.205191IPR005172CRC domain
SMARTSM011146.0E-175192IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.3E-135389IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MPETSHTETV LSTRQQIESR NPLAFAPKVI HTSEPGLELG DFSNKTPASA RHKRGCNCKK  60
SSCLKKYCEC FQGGVGCSIS CRCEGCKNAF GKREGAAVLG IEEPKQGLEE KNVCVKEEKS  120
EIDKQLVIYQ TTDAAPAENV LTTPSMVECR PLACLPAPSS KKAXKNHDLQ QNSLDXLSRC  180
ATYKLLQRPT MCCPHLKTTQ KRSLVDSPIK IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-11208863120Protein lin-54 homolog
5fd3_B4e-11208863120Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.74360.0inflorescence| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443515.11e-97protein tesmin/TSO1-like CXC 2
RefseqXP_008646482.13e-98uncharacterized protein LOC100384542 isoform X3
TrEMBLC4IYH13e-99C4IYH1_MAIZE; Uncharacterized protein
STRINGSb08g020800.15e-97(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-46TESMIN/TSO1-like CXC 2