PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014215
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 211aa    MW: 23064.4 Da    PI: 10.0555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-35371PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.7e-21152201255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a+++a  +++g
  Sof014215 152 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDQAXIEFRG 201
                8********.**********82....48**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-23152210IPR016177DNA-binding domain
PROSITE profilePS5103224.908152209IPR001471AP2/ERF domain
PfamPF008472.6E-14152201IPR001471AP2/ERF domain
SMARTSM003802.3E-33152211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-32152209IPR001471AP2/ERF domain
PRINTSPR003671.2E-11153164IPR001471AP2/ERF domain
CDDcd000181.31E-28155210No hitNo description
PRINTSPR003671.2E-11175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
XSERLAIRRT HTSSDCNSPH MTNRTFSAMA ANQSYIIRFD GHSDDPSPSS AGAEPPGPQP  60
PFAGRRMISP EQEHQVIVAA LLHVVSGYTT PPPEVFPPPP AACCQVCGME RCLGCEFFAA  120
GEAAAAATAL DGAGKVPAAA PGQRRRRKKK NKYRGVRQRP WGKWAAEIRD PRRAVRKWLG  180
TFDTAEEAAR AYDQAXIEFR GPRAKLNFPV X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-211522091472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149RRRRKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.195160.0crown| meristem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973673.11e-85ethylene-responsive transcription factor ERF109
SwissprotQ9SZ061e-31EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A3L6RLI78e-85A0A3L6RLI7_PANMI; Uncharacterized protein
STRINGSi014237m5e-85(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-26redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]