PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014240
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 211aa    MW: 23001.8 Da    PI: 9.8151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-82895PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1884133255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f +ae Aa a+++a++  +g
  Sof014240  84 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPSAEAAALAYDHAARDVRG 133
                69*******.**********75....44**********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.56E-1883140No hitNo description
PROSITE profilePS5103224.15784141IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2284142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.5E-3284143IPR001471AP2/ERF domain
SMARTSM003805.2E-3684147IPR001471AP2/ERF domain
PRINTSPR003671.7E-108596IPR001471AP2/ERF domain
PfamPF008471.4E-1185133IPR001471AP2/ERF domain
PRINTSPR003671.7E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPARRGK GKQRKADDFE AAFREFDEEM MEAGEEVEVV SKPAFVFRAS  60
SSLPTKPRAR QEEQPNRRRK PAQQYRGVRR RPWGKWAAEI RDPVKGVRVW LGTFPSAEAA  120
ALAYDHAARD VRGPRAKLNF PSSSSAAAGA PASRKRARAA DAIIDLVDQE EQEQRAAAAT  180
LKHEAADESS GFGALPDFLW QGVSAGYGEV P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2183141463ATERF1
3gcc_A1e-2183141463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.73563e-82bud| callus| crown| leaf| meristem| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465747.11e-75ethylene-responsive transcription factor 1
TrEMBLB6STB61e-68B6STB6_MAIZE; Ethylene-responsive element binding protein 2
STRINGSb01g045040.14e-75(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-23ethylene-responsive element binding protein