PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014291
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 210aa    MW: 23472 Da    PI: 10.7381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-109318PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07125172347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E  +lvd+v+++G g W+ I +        Rt  ++k++w+++
        Sof014291 125 AWTLCEVVKLVDGVARFGAGKWSEIRKLSFasySYRTSVDLKDKWRNL 172
                      7************************9999999*99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.538118177IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-12120175IPR009057Homeodomain-like
SuperFamilySSF466891.72E-14120178IPR009057Homeodomain-like
SMARTSM007174.4E-6122175IPR001005SANT/Myb domain
CDDcd116603.84E-17124174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
XNEADSLGTI YPTRKDTLGG FSVHVPYVSR MRRGRPRKDF ISFADKEPSV EPKGIQTAVE  60
MILAKDVDKG NHLRKAPEVP LNVSSEKGHI EAVDSKGVQN LQAKVYSAVA KPKIKRGLTR  120
KHHRAWTLCE VVKLVDGVAR FGAGKWSEIR KLSFASYSYR TSVDLKDKWR NLIRATKTQL  180
PAQKDGACPR KINPSIIPIP PSILFVVKEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13137RRGRPRK
23138RRGRPRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.62191e-108bud| crown| inflorescence| leaf| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314012.11e-131uncharacterized protein LOC110434400 isoform X2
TrEMBLA0A059Q1M81e-146A0A059Q1M8_9POAL; MYB-related protein
STRINGSb04g034770.11e-128(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-34TRF-like 6