PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014363
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 210aa    MW: 24212 Da    PI: 7.5081
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17291085PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1755.6e-546196156344
       GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesF 253
                 +++etg+rL++fA++lgvpf+f+ ++a ++e++++++L+++++E+l+Vn  ++  +l de ++++s  +rd vL  +++++P+v++++ +++++n++ F
  Sof014363   6 ARIQETGRRLTNFARRLGVPFRFHSIAAAKWETVSVDDLNIEHDEVLVVNGLFHFGKLIDEGADIDSlsPRDMVLGNIRKMRPDVFILCTENSSYNAPFF 105
                689***********************999***********************************99999******************************* PP

       GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                ++rf eal yysa+fd+++a +pr+s+er+ vE++l+g+ + n++aceg++r+er et+++W+ r e+aG++++pl+ +++k ++  lr+ 
  Sof014363 106 VTRFREALFYYSAMFDMMDALAPRDSDERVLVEQHLFGQCALNAIACEGSDRVERPETYRQWQVRNERAGLRQLPLDPDIVKGISKKLRTX 196
                **********************************************************************************999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.2571206IPR005202Transcription factor GRAS
PfamPF035142.0E-516196IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
XFRPAARIQE TGRRLTNFAR RLGVPFRFHS IAAAKWETVS VDDLNIEHDE VLVVNGLFHF  60
GKLIDEGADI DSLSPRDMVL GNIRKMRPDV FILCTENSSY NAPFFVTRFR EALFYYSAMF  120
DMMDALAPRD SDERVLVEQH LFGQCALNAI ACEGSDRVER PETYRQWQVR NERAGLRQLP  180
LDPDIVKGIS KKLRTXTTKT LWLMWISNGX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-203182155329GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.165960.0root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450068.21e-125scarecrow-like protein 14
SwissprotP0C8847e-64SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A1Z5RK421e-124A0A1Z5RK42_SORBI; Uncharacterized protein
STRINGSb05g027783.11e-125(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.12e-65GRAS family protein