PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014371
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 210aa    MW: 22400.2 Da    PI: 5.4541
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17391987PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS161.57.1e-50720863273
       GRAS  63 alppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                + ++ ++s+ ++  ++ a+k+f +v+P+l+f+h+t+ qa+l+++ g++++H++Dfdi+ G QW++L+q+La R+ + ++l++T+++s +s+  +  el+ 
  Sof014371   7 TTTADASSPVDVLLKIGAYKAFADVCPVLQFAHFTCVQAVLDELGGATCIHVLDFDIGVGEQWASLMQELARRR-PGATLKVTALVSTASQshHPLELQL 105
                4455556666688999*******************************************************985.5589*******98877778899*** PP

       GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                ++e+L++fA+e++vpf+  ++   +l+++++ eL ++  g+a+aV+l     + +    +     ++vL+lv++l +k+vv v++ +d+++ +F +++++
  Sof014371 106 VHENLSNFAAETRVPFQLAFF---DLDAMDPAELlAITAGDAVAVHLPSGSVHAP----A----VPSVLHLVRRLGAKLVVSVDRSCDRGELPFXAHLFQ 194
                ********************9...888888776538888**********999999....4....456********************************* PP

       GRAS 260 aleyysalfdslea 273
                a++ ++ l++sl+a
  Sof014371 195 AVQSCVFLLESLDA 208
                ************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.1991210IPR005202Transcription factor GRAS
PfamPF035142.5E-477208IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
RAALSTTTTA DASSPVDVLL KIGAYKAFAD VCPVLQFAHF TCVQAVLDEL GGATCIHVLD  60
FDIGVGEQWA SLMQELARRR PGATLKVTAL VSTASQSHHP LELQLVHENL SNFAAETRVP  120
FQLAFFDLDA MDPAELLAIT AGDAVAVHLP SGSVHAPAVP SVLHLVRRLG AKLVVSVDRS  180
CDRGELPFXA HLFQAVQSCV FLLESLDAVX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-122512380180GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.232450.0inflorescence| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468689.21e-121scarecrow-like protein 6
TrEMBLA0A0A9H9V71e-117A0A0A9H9V7_ARUDO; Uncharacterized protein
STRINGSb01g050333.11e-123(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.12e-41GRAS family protein