PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof014383

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bHLH

Protein Properties

Length: 209aa MW: 22824.2 Da PI: 8.3519

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-102205	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.7	1.6e-16	42	88	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Sof014383 42 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 88 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.93E-19	35	92	No hit	No description
SuperFamily	SSF47459	2.75E-21	36	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.981	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-21	42	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-14	42	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-17	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
XPEKRKSQTE CSASQDDDLD DESGGMQRSG SRGTKRSRTA EVHNLSERRR RDRINEKMRA 60 LQELIPNCNK IDKASMLDEA IEYLKTLQLQ VQMMSMGSGL CIPPMLLPPT MQHLQIPPIA 120 HFPHLGMGLG YGMGVLDMNN TAAVPFPPMP GAHFPCSMIP GTPPQGLGMP GRNMMPMFGV 180 PGQAIHPSAS SIQPFPSWAG LPVRPNLAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	51	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021312914.1	1e-126	transcription factor APG-like isoform X2
Swissprot	Q0JNI9	1e-107	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	A0A2U8KGL0	1e-132	A0A2U8KGL0_9POAL; Phytochrome-interacting factor-3
STRING	Si000700m	1e-124	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-36	phytochrome interacting factor 3

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]