PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof014384

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 209aa MW: 22447.5 Da PI: 11.5074

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-102803	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	13	57	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky Sof014384 13 PWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 57 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.186	6	62	IPR017930	Myb domain
SuperFamily	SSF46689	8.22E-18	9	63	IPR009057	Homeodomain-like
SMART	SM00717	9.8E-11	10	60	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.0E-18	11	61	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.6E-11	12	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-12	13	57	IPR001005	SANT/Myb domain
CDD	cd00167	1.47E-10	13	58	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
HGSTHASASP GVPWTEDEHR RFLAGLEKLG KGDWRGISRH FVTTRTPTQV ASHAQKYFLR 60 QSSLTHKKRR SSLFDVVENA DRAATSSIKD REQRLRLKDA IATTASAAAP GTTTPELPAL 120 SLGIISRPAR RPDYVALPPT SLSLQLPRYS AAMGSASPSL ALAAPKHHHP SSTLTAAAKA 180 SSSRALPDLE LKISPPGRVT PFLGTIRVI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.12893	2e-92	bud\| callus\| crown\| inflorescence\| leaf\| meristem\| root\| seed\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455021.1	1e-101	transcription factor MYBS3
TrEMBL	A0A059PYW3	1e-107	A0A059PYW3_9POAL; MCB2 protein
STRING	Sb03g003100.1	1e-101	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	6e-34	MYB_related family protein