PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014405
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 209aa    MW: 22468.5 Da    PI: 7.083
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-23416PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.32.1e-12130154327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C+f+ +tG Ck+G++CkF+H++
  Sof014405 130 EPVCSFYVKTGKCKFGANCKFNHPK 154
                789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.36176103IPR000571Zinc finger, CCCH-type
SMARTSM003560.1376102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286127155IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6127154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-7129155IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-10130154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5132152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSDPFNPYYR GAFAGGDSAP PPPPRYSDFE VDLIASRYTG TEPPYPSSAD VGAFDSHLGA  60
DDPRKVPNVE DSYPERPGEP DCPYLLSSRC KFKSKCKFNH PKKMVNALAT GTDSESLIAD  120
SGILPVRPSE PVCSFYVKTG KCKFGANCKF NHPKPKDTKT PPLIAKETIY TATTDAAVHI  180
GAADDSVPAK KHVPTAPAEA HNAXGLXIX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.133950.0crown| inflorescence| meristem| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021312416.11e-101zinc finger CCCH domain-containing protein 8-like isoform X1
SwissprotQ5ZDJ62e-44C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A2R4QN841e-118A0A2R4QN84_9POAL; Zinc finger-like protein
STRINGSb03g027910.11e-101(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.15e-22floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]