PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014416
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRF
Protein Properties Length: 209aa    MW: 22409.9 Da    PI: 10.8023
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-48009PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.42.5e-23122166145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                daepgrCrRtDGKkWRCsr++++++k+CErH++rg++rsrk++e 
  Sof014416 122 DAEPGRCRRTDGKKWRCSRDAVGDQKYCERHIKRGCHRSRKHVEG 166
                79****************************************996 PP
2QLQ58.22.5e-206298137
        QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++
  Sof014416 62 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIKR 98
               59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-126298IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.5E-146396IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.3086398IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.668122166IPR014977WRC domain
PfamPF088792.4E-18123165IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEGGGRDVFL GPPPPCPFHG SATAARSGGA QMLSFSSSNG AAGLGLCSRA SKMHSVLSRV  60
RGPFTPTQWM ELEHQALIYK HFAVNAPVPS SLLLPIKRSL NPWSSLGSSS LGWAPFRSGS  120
GDAEPGRCRR TDGKKWRCSR DAVGDQKYCE RHIKRGCHRS RKHVEGRKAT PTIADPTMAV  180
SGELLXHSHA GARLQXAKNS AANVTDPFS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.131550.0bud| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106041.11e-114putative growth-regulating factor 2
SwissprotQ6AWY12e-78GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLA0A1D6F6N31e-113A0A1D6F6N3_MAIZE; Growth-regulating factor 2
TrEMBLA0A3L6FVQ31e-113A0A3L6FVQ3_MAIZE; Growth-regulating factor 8
TrEMBLB6SPI01e-113B6SPI0_MAIZE; GRF transcription factor
STRINGGRMZM2G099862_P011e-114(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-41growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]