PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof014422

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bZIP

Protein Properties

Length: 209aa MW: 23139.8 Da PI: 9.3569

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-56944	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.5e-10	45	103	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +++ eLe+k+++L++e ++L +l l+ l++e+ Sof014422 45 KRAKRILANRQSAARSKERKIKYTSELERKIQTLQTEATTLSAQLTLLQRDTTGLTTEN 103 9********************************************99998877777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-15	41	105	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.852	43	106	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.6E-11	45	99	No hit	No description
SuperFamily	SSF57959	7.74E-11	45	97	No hit	No description
Pfam	PF00170	1.0E-8	45	102	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.26E-21	46	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
STHASGYIDG ATSEGESALS GGLPDYAKKA MPAERIAELA LIDPKRAKRI LANRQSAARS 60 KERKIKYTSE LERKIQTLQT EATTLSAQLT LLQRDTTGLT TENRELKLRL QSMEEQAKLQ 120 DALNEALREE VQRLKIAAGQ VGNMNGNPFN GGLQQQIPSY LVQQQQQQQM SYFGGHQAQH 180 HNQNHRHQSP SNGGQSLSGQ SLNDSMDFI

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441871.1	1e-131	transcription factor VIP1
Swissprot	Q04088	2e-55	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	C5YS97	1e-130	C5YS97_SORBI; Uncharacterized protein
STRING	Sb08g003940.1	1e-131	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31370.5	2e-43	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]