PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof014573

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C2H2

Protein Properties

Length: 207aa MW: 21908.1 Da PI: 4.4264

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-102087	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.5e-06	181	202	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 + C+ C+ksF + s L++H++ Sof014573 181 HACKSCNKSFGSASALESHQKA 202 67******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.7E-6	170	205	No hit	No description
PROSITE profile	PS50157	11.177	181	207	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	183	205	IPR007087	Zinc finger, C2H2
Pfam	PF12874	5.1E-4	183	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
XDFEISHNSK TASVFFCGYK SPVPLFEPDS GEDSSDEELE TDQIPTNEIS AAKVPVKGGM 60 KVESSSSDDD DDFTDSESDS EMSDEDDSSD EDEVSSGADP SDDSGSEEQT PTPKKTDVVV 120 GKKRAIEVEA PSGKKAKSEQ SAQKTGDKVS THSAKQSSKT PADKSTKTPT ADKKSPKSGS 180 HACKSCNKSF GSASALESHQ KAKKHEA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.18614	0.0	crown\| inflorescence\| leaf\| meristem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458956.1	8e-89	histone deacetylase HDT3
TrEMBL	C5XFK2	2e-87	C5XFK2_SORBI; Uncharacterized protein
STRING	Sb03g043350.1	3e-88	(Sorghum bicolor)