PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014663
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 207aa    MW: 22179.4 Da    PI: 10.0147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17416989PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.5e-1273121155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+ykGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  Sof014663  73 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 121
                78****9888.8*********......44**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-873121IPR001471AP2/ERF domain
CDDcd000181.46E-2173129No hitNo description
SuperFamilySSF541711.63E-1673129IPR016177DNA-binding domain
SMARTSM003802.4E-2474135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1974129IPR001471AP2/ERF domain
PROSITE profilePS5103219.65174129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDSASSLVDD TSSGASTDKL RALAVASGPP LERMGSGASA VVDAAEPGAE ADSGGSAGGA  60
AGAVGVVGRL PSSRYKGVVP QPNGRWGAQI YERHQRVWLG TFAGEADAAR AYDVAAQRFR  120
GRDAVTNFRP LADTDPDAAP ELRFLASRFK VQGVYMLRKH TYLDELAQNK RAFSHRRLFR  180
GLGYPSCLRT ITNSKYFFVT AALXXNW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.160440.0crown| leaf| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398137.12e-82AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X2
SwissprotQ6L4H44e-76Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A3L6FN242e-84A0A3L6FN24_MAIZE; AP2/ERF and B3 domain-containing protein
STRINGSb09g027530.13e-81(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.15e-37RAV family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]