PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014687
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bZIP
Protein Properties Length: 206aa    MW: 22728.5 Da    PI: 6.5304
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-129396PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.13.3e-22114176163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s++
  Sof014687 114 ERELKRQRRKQSNRESARRSRLRKQAECEELAKRADVLKQENASLRDEVNRIRKEYEELLSKN 176
                89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165963.1E-19187No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-16108173No hitNo description
PfamPF001701.5E-20114176IPR004827Basic-leucine zipper domain
SMARTSM003381.3E-20114178IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.323116179IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.56E-11117173No hitNo description
CDDcd147022.75E-19119169No hitNo description
PROSITE patternPS000360121136IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
SQSGESGSDS SSEGSEGNSH NDSHHKESGQ EQDGDVRSSQ NGASRSPSEG KLNQAMTIVP  60
VPSSGPVTGP TTNLNIGMDY WANTASSAPA IHGKVTPTTV PGAVVPAEQW IQDERELKRQ  120
RRKQSNRESA RRSRLRKQAE CEELAKRADV LKQENASLRD EVNRIRKEYE ELLSKNNSLK  180
EKLEANNTQL MRRDFTTSCN IFGDDX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136RRSRLRK
2130137RRSRLRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}.
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.2}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.2). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.2). {ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301985.11e-116bZIP transcription factor 68-like
RefseqXP_021301986.11e-116bZIP transcription factor 68-like
SwissprotA0A3B6MPP58e-94BZP1D_WHEAT; bZIP transcription factor 1-D
SwissprotB6E1079e-94BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLA0A1B6PCH31e-114A0A1B6PCH3_SORBI; Uncharacterized protein
STRINGSb08g008300.21e-115(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-35basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]