PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014708
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GeBP
Protein Properties Length: 206aa    MW: 22557.7 Da    PI: 11.0108
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-45721PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57332.91.7e-1054144297
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                lfqr ws  De+ +L +l +++ ++g  +     +++  + +s++ k v  ++l  K r++K+++ ++ kk         + eh++  + l + +Wg
  Sof014708  54 LFQRTWSPGDEVRILEALATYRREHG-GSLPTPAELFGALDGSLDKKgVGAKELAIKQRSFKRRYDRDAKK-----TAPPADEHERRLYLLYRHVWG 144
                69************************.77889999999*****98765899******************99.....445567999999*99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.6E-1555144IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAPSSPRRKK PSSAAKRAST GPTALPGRNK RKTPPPLPEA SGATQPPAKR KPALFQRTWS  60
PGDEVRILEA LATYRREHGG SLPTPAELFG ALDGSLDKKG VGAKELAIKQ RSFKRRYDRD  120
AKKTAPPADE HERRLYLLYR HVWGRDPPPR PPVAEVPRAT QGKGAGAQAS KDAAQAKSAD  180
HQSGKEAVKP KAKTFDEMRE LYPYLV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313179.11e-128uncharacterized protein LOC8067712
TrEMBLA0A1D6LF261e-104A0A1D6LF26_MAIZE; Tyrosine specific protein phosphatase-like
STRINGSb01g024673.11e-114(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00610.11e-09DNA-binding storekeeper protein-related transcriptional regulator