PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014723
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 206aa    MW: 22280.5 Da    PI: 8.1491
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-63426PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06115134525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                +C+ +   G+C+ G++C++ H
  Sof014723 115 ECNMYKM-GFCPNGPNCRYKH 134
                6776666.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.6E-55682IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9575683IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-55783IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-65781IPR000571Zinc finger, CCCH-type
SMARTSM003560.0184110IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.59684109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.831110137IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026112136IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4115134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4116134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDDGDGGLSF DFEGGLDSVP AAGGGGPVPS STDPGAGGGG GGDGLGMHGR GRGRGSYRQT  60
VCRHWLRGLC MKGEACGFLH QFDKARMPVC RFFRDFGECR EPDCAYKHSY DDVKECNMYK  120
MGFCPNGPNC RYKHIKLPGP PPSVEEVLQK ILQMRSFNRY GQNRNNNYNQ QGERPQHPQG  180
SGMPNQNSAE NATAAAXPAG GQQAQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dnh_C5e-215813665145Cleavage and polyadenylation specificity factor subunit 4
6fbs_C3e-21813611144Cleavage and polyadenylation specificity factor subunit 4
6fuw_C3e-21813611144Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.176851e-172callus| inflorescence| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437445.11e-144zinc finger CCCH domain-containing protein 45
SwissprotQ0DA501e-94C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLC5Z7U31e-143C5Z7U3_SORBI; Uncharacterized protein
STRINGSb10g027200.11e-143(Sorghum bicolor)