PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof014762

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRAS

Protein Properties

Length: 206aa MW: 22826.1 Da PI: 6.2344

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17395786	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	194.8	5.4e-60	1	172	48	221
GRAS 48 ALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRi 144 ALa r++r+++++++ pp+e ++ ++ ++al++++ ++Pi++f h+t N+ +l+a++g++rvH+iDfdi+qGlQWp Llq+La+R++gpp ++Ri Sof014762 1 ALALRVVRMWPHVFDVAPPRELTDGAvaDDDDATALRVLNAITPIPRFLHFTLNERVLRAFDGHDRVHVIDFDIKQGLQWPGLLQSLATRASGPPaHVRI 100 8*******************9888666778888999*************************************************88887 PP GRAS 145 TgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221 Tgvg+ s++el+etg rL ++A++lg+ fef++ v++rled++l++L+vk+gE++aVn+vl+ hrll+e++ Sof014762 101 TGVGE----SRQELQETGARLGRVAAALGLAFEFHA-VVDRLEDVRLWMLHVKRGECVAVNCVLAAHRLLREETGAG 172 *....9**********************.7******************************8876554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.425	1	206	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-57	1	172	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
ALALRVVRMW PHVFDVAPPR ELTDGAVADD DDATALRVLN AITPIPRFLH FTLNERVLRA 60 FDGHDRVHVI DFDIKQGLQW PGLLQSLATR ASGPPAHVRI TGVGESRQEL QETGARLGRV 120 AAALGLAFEF HAVVDRLEDV RLWMLHVKRG ECVAVNCVLA AHRLLREETG AGIADFLGLE 180 RGAGLEDPIL REHEDALNFR RLEGSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	9e-32	34	156	96	217	Protein SCARECROW
5b3h_D	9e-32	34	156	96	217	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.2013	0.0	inflorescence\| meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269\|PubMed:19220793}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269\|PubMed:19220793, ECO:0000269\|PubMed:22685166}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269\|PubMed:19220793}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812393.1	1e-116	protein DWARF AND LOW-TILLERING
Swissprot	Q9LWU9	2e-91	DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBL	A0A2S3HMA3	1e-115	A0A2S3HMA3_9POAL; Uncharacterized protein
TrEMBL	A0A2T7E3I1	1e-115	A0A2T7E3I1_9POAL; Uncharacterized protein
STRING	Sb10g001690.1	1e-115	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	5e-72	GRAS family protein

Publications ? help Back to Top
Tong H,Chu C Roles of DLT in fine modulation on brassinosteroid response in rice. Plant Signal Behav, 2009. 4(5): p. 438-9 [PMID:19816111] Li W, et al. Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice. Planta, 2010. 232(6): p. 1383-96 [PMID:20830595] Tong H, et al. DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice. Plant Cell, 2012. 24(6): p. 2562-77 [PMID:22685166] Zhang C,Bai MY,Chong K Brassinosteroid-mediated regulation of agronomic traits in rice. Plant Cell Rep., 2014. 33(5): p. 683-96 [PMID:24667992] Yang C,Shen W,He Y,Tian Z,Li J OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice. PLoS Genet., 2016. 12(6): p. e1006118 [PMID:27332964]