PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014924
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family SBP
Protein Properties Length: 204aa    MW: 21554.1 Da    PI: 9.332
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-77860PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP38.92.3e-12160190232
                -SSTT-----TT--HHHHHTT--HHHHT-S- CS
        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapv 32 
                CqvegC++dls+akey+r+hk+C vhskap+
  Sof014924 160 CQVEGCKVDLSSAKEYNRKHKICVVHSKAPQ 190
                ****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.7E-13152190IPR004333Transcription factor, SBP-box
PROSITE profilePS5114110.879157204IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-11158190IPR004333Transcription factor, SBP-box
PfamPF031102.6E-8160190IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGSFGMNWNQ KNSMVWDWEH LVPSVSNAVT RHGSANSSGG TLTSSSELGH GSSKSSISAS  60
IDSPSGVGNS LEFNFAAVER HVKNTGTNGR VDGSGNSPSS MIAFSPGEPL ISLKLGKRAY  120
FENVCGGQDA KVSAPSDVTS AATVVKKTKV SQQNAKNWYC QVEGCKVDLS SAKEYNRKHK  180
ICVVHSKAPQ GGCCWSRAPV LPTM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.117800.0bud| crown| leaf| meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149534.11e-112SBP-transcription factor25
RefseqNP_001352585.11e-112SBP-transcription factor25
RefseqXP_008643717.11e-112squamosa promoter-binding-like protein 11 isoform X1
RefseqXP_008643719.11e-112squamosa promoter-binding-like protein 11 isoform X1
RefseqXP_008643720.11e-112squamosa promoter-binding-like protein 11 isoform X1
SwissprotA2YGR59e-57SPL12_ORYSI; Squamosa promoter-binding-like protein 12
SwissprotQ5Z8181e-56SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBLC4IZ751e-115C4IZ75_MAIZE; Squamosa promoter-binding-like protein 11
STRINGGRMZM2G414805_P051e-112(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.37e-19squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu Q, et al.
    The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
    J Integr Plant Biol, 2015. 57(10): p. 819-29
    [PMID:25677853]