PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof014972
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 204aa    MW: 21880.3 Da    PI: 10.0106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S53268063PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-121411055
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               ++RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Sof014972  1 QKRRDRINQKMKTLQKLVPNS-----NKTDKASMLDEVIDYLKQLQ 41
               69******************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-15149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-10141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-14145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
QKRRDRINQK MKTLQKLVPN SNKTDKASML DEVIDYLKQL QAQVQAMSRM SSLMMPMGMA  60
MPQLHQMSVM AQMAQMAQVA HTMAQGMMNM GSLAQQGYAG LTTPMMHPPP PFVPMPWDPA  120
AAAAAATTSS AAGPGPAAAA TSVAQQPGGG TAVPDAFSAF LACQAQQNGQ QQQPGSMEAY  180
NRMVALYQKM NQLHQSEPSN PSKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658346.15e-64transcription factor UNE10 isoform X3
TrEMBLA0A1D6K8G46e-58A0A1D6K8G4_MAIZE; Transcription factor UNE10
TrEMBLA0A317YDQ75e-58A0A317YDQ7_MAIZE; Transcription factor UNE10
STRINGOB10G25310.18e-53(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-20bHLH family protein