PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015015
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 203aa    MW: 21135.7 Da    PI: 8.7739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-70405PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-0584106123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ CgksFs+   L  H  +H
  Sof015015  84 FRCSVCGKSFSSYQALGGHKTSH 106
                89**********99998888777 PP
2zf-C2H2130.00031161183123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F++   L  H r+H
  Sof015015 161 HRCSICHKEFPTGQALGGHKRKH 183
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.63E-984106No hitNo description
SMARTSM003550.005484106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.92684111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-484106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.6E-1384107IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576673.63E-9156183No hitNo description
PfamPF139128.6E-13160185IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058161183IPR007087Zinc finger, C2H2
SMARTSM003550.043161183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MELLHAVIPE KQSEEEAVAL MAPAATTTTT SSSGDEVAHV PQGWAKKKRS RRQRSEEENL  60
ALCLLMLSRG GNHRVQAAPV AAEFRCSVCG KSFSSYQALG GHKTSHRVKL PTPPAAAVVP  120
AAVPLVEVVI PPPPVEVVVR EPATSSTAAS SDGAAASSRV HRCSICHKEF PTGQALGGHK  180
RKHYDGGVGS SAASTDVLAT AAX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.186500.0crown| leaf| meristem| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}.
UniprotTISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}.
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463836.11e-84zinc finger protein 1
SwissprotQ424302e-68ZFP1_WHEAT; Zinc finger protein 1
TrEMBLC5X0312e-83C5X031_SORBI; Uncharacterized protein
STRINGSb01g007170.14e-84(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.14e-21zinc-finger protein 1