PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015043
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 203aa    MW: 23276.2 Da    PI: 11.633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17370137PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-16115164255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r ++ +g+W+AeIrdp+    +  r++lg+f tae    a+++a+++++g
  Sof015043 115 RYRGIRCRP-WGKWAAEIRDPV----KgVRVWLGTFPTAEAXXLAYDHAARNMRG 164
                7*****999.**********75....44*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-19115173IPR016177DNA-binding domain
PROSITE profilePS5103221.931115172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-29115172IPR001471AP2/ERF domain
PfamPF008474.9E-9115164IPR001471AP2/ERF domain
SMARTSM003803.9E-30115178IPR001471AP2/ERF domain
PRINTSPR003679.7E-12116127IPR001471AP2/ERF domain
CDDcd000181.58E-22118173No hitNo description
PRINTSPR003679.7E-12154174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
PIFRIDPRVR EKERKASRAG QPANQQQQGE RDRAKMCGGA ILVDLNPSTP PRRMEMQRKA  60
DDFEAAFREF DEEDEEMVEW KTKPAPSLVF RATKPMARQV QQQAALSRRR NPARRYRGIR  120
CRPWGKWAAE IRDPVKGVRV WLGTFPTAEA XXLAYDHAAR NMRGPRAKLN FPAFFLXHGA  180
GGARAXXKRA RAXTHMLISS VAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21113172363ATERF1
3gcc_A4e-21113172363ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.165350.0crown| meristem| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.13e-43ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2T8I6496e-42A0A2T8I649_9POAL; Uncharacterized protein
STRINGPavir.Ia04158.1.p3e-37(Panicum virgatum)
STRINGSb01g045040.11e-37(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-21ethylene-responsive element binding protein