PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof015123

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

LBD

Protein Properties

Length: 202aa MW: 21738.5 Da PI: 8.0416

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17353844	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.5	1.3e-44	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+++lal+k+e Sof015123 20 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEAHARMRDPVYGCVGAISYLQQQVSQLQVQLALAKAE 119 7***********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.568	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.8E-44	20	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MAGSGSGSGS GGSSSGGSPP CASCKLLRRR CTQECVFAPY FPPEDPHKFA IVHKVFGASN 60 VSKMLQELPA QQRADAVSSL VYEAHARMRD PVYGCVGAIS YLQQQVSQLQ VQLALAKAEI 120 LCVQMQHDES ASAAAAPAPA KQQLHHHHHQ QQEMECEAYG SLLLXNGLMM NTLNSTGAVH 180 QHQQMLGGFG LRGHCIMLQR RA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-48	13	121	4	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-48	13	121	4	112	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.16175	0.0	leaf\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002441669.2	2e-92	LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-66	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1D6QG83	4e-89	A0A1D6QG83_MAIZE; F10K1.23
TrEMBL	A0A3L6EZ05	4e-89	A0A3L6EZ05_MAIZE; Uncharacterized protein
STRING	Si026864m	1e-85	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-55	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]