PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015154
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 201aa    MW: 23065.7 Da    PI: 6.9861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-129692PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.0007256931355
               HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               R+ i +++  Lrel+P+a      K s  + L k+v Y+  Lq
  Sof015154 56 RQLIQDRMKGLRELIPNA-----SKCSIDALLDKTVAYMLFLQ 93
               677999***********9.....68888889999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.5974392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-556108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-656107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
XMNEGFISCA MTDGCMGINK TITEECLVES MHGINSAEIK RRCRKVELQK PRPRDRQLIQ  60
DRMKGLRELI PNASKCSIDA LLDKTVAYML FLQSVSEKAE KIQNTLEDKE SHNETKKQLE  120
GCPLRVEELN QPGHLLIEML CEDYEVFLEM AQVLKGLKVS ILKGVLEHRS DKLWARFVIE  180
GSDGFNQMQI LCPLMHLLSR R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307839.11e-134transcription factor EMB1444 isoform X3
TrEMBLA0A1B6Q8K31e-130A0A1B6Q8K3_SORBI; Uncharacterized protein
STRINGGRMZM2G404922_P011e-120(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.14e-40conserved peptide upstream open reading frame 7