PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015236
Common NameERF3
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 201aa    MW: 20748.5 Da    PI: 6.7457
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S37582707PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-202676256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               + +GVr ++ +gr++AeIrdp+    ++r++lg+f+t+e+Aa+a++aa+++l+g+
  Sof015236 26 RLRGVRKRP-WGRYAAEIRDPVL---KARVWLGTFDTPEQAARAYDAAARRLRGP 76
               679******.**********744...5**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-132575IPR001471AP2/ERF domain
CDDcd000182.25E-162585No hitNo description
SMARTSM003801.6E-312689IPR001471AP2/ERF domain
PROSITE profilePS5103222.6552683IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-202684IPR016177DNA-binding domain
PRINTSPR003671.1E-92738IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-292884IPR001471AP2/ERF domain
PRINTSPR003671.1E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAPKRSTSPT GSSSGGVRAA ATEQPRLRGV RKRPWGRYAA EIRDPVLKAR VWLGTFDTPE  60
QAARAYDAAA RRLRGPGATT NYPAASEPMV PAVSGSAVLS ESSSSSSWSL LPESVTAAVA  120
APPPSLDLSL ALPASAAAAN TYQVFMDPTP ALLQFLPPKS EEEQSCSGSL SSSSGVFDAA  180
PPVGLGLDLN LALLPPAEMV M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-211683472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.52200.0crown| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821473.17e-66ethylene-responsive transcription factor 4-like
TrEMBLA4FS081e-137A4FS08_SACOF; Ethylene responsive transcription factor
STRINGSb07g006195.11e-62(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-19ERF domain protein 11
Publications ? help Back to Top
  1. Trujillo LE, et al.
    SodERF3, a novel sugarcane ethylene responsive factor (ERF), enhances salt and drought tolerance when overexpressed in tobacco plants.
    Plant Cell Physiol., 2008. 49(4): p. 512-25
    [PMID:18281696]