PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof015270

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

HD-ZIP

Protein Properties

Length: 200aa MW: 21125 Da PI: 10.7962

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-298133726	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.5	6.4e-15	134	187	2	55
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 rk+ +++k+q +Lee+F+ +++++ +++ LA++lgL V vW qNrRa+ Sof015270 134 RKKLRLSKDQAVVLEECFKTHSTLNPKQKLALATRLGLRPXEVEVWLQNRRART 187 778899**********************************************96 PP
2	HD-ZIP_I/II	89.1	5.6e-29	134	199	1	66
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaL 66 +kk+rlsk+q+ +LEe+F+++++L+p++K +la++Lgl+p v+vW qnrRARt++kq+E+d+++L Sof015270 134 RKKLRLSKDQAVVLEECFKTHSTLNPKQKLALATRLGLRPXEVEVWLQNRRARTQLKQTEVDCQYL 199 69**************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.171	130	190	IPR001356	Homeobox domain
SMART	SM00389	6.4E-10	132	194	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.72E-14	133	198	IPR009057	Homeodomain-like
CDD	cd00086	7.94E-10	134	186	No hit	No description
Pfam	PF00046	2.3E-12	134	187	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-13	134	187	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MMPRTSGASL DLGLSLGLGL TSQGSLSSST TTAGSSSPWA AALSSVVADV ARARDVDAHA 60 HYHAASAAAA AGLDLVDPAD RAAMRASTSP DSAAALSSGA SGDNTNKRDR ELQRTGSGGV 120 RSNRRTARTA LAXRKKLRLS KDQAVVLEEC FKTHSTLNPK QKLALATRLG LRPXEVEVWL 180 QNRRARTQLK QTEVDCQYLX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.19049	0.0	crown\| inflorescence\| root\| seed\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:17999151}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436446.1	2e-68	homeobox-leucine zipper protein HOX2
Swissprot	Q5VPE3	2e-39	HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
Swissprot	Q84U86	2e-39	HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBL	C5Z3S7	4e-67	C5Z3S7_SORBI; Uncharacterized protein
STRING	Sb10g002750.1	7e-68	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44910.1	5e-27	homeobox-leucine zipper protein 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]