PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015321
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 199aa    MW: 21834.5 Da    PI: 11.0639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-114826PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20119168255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa ++++a+ +l+g
  Sof015321 119 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEEAALRYDQAAYRLRG 168
                59******9.**********966...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.51E-29118177No hitNo description
SMARTSM003801.9E-31119182IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21119177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-31119177IPR001471AP2/ERF domain
PROSITE profilePS5103222.524119176IPR001471AP2/ERF domain
PfamPF008473.7E-14120168IPR001471AP2/ERF domain
PRINTSPR003679.2E-11120131IPR001471AP2/ERF domain
PRINTSPR003679.2E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAAAIDLSGE ELMRALEPFI QDASSAPHGS SPLLHPHQPL SPSSPFSFHQ VAAAAAYGGY  60
PFAAAAEGAG QLSPAQMQYI QARLHLQRQS TQSSVLGPRA QPMKASAATA PTPPRSQKLY  120
RGVRQRHWGK WVAEIRLPRD RTRLWLGTFD TAEEAALRYD QAAYRLRGDA ARLNFPDKRR  180
LLAARSTPSV ERPPQKKGX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19118176463ATERF1
3gcc_A3e-19118176463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.206651e-173bud| crown| inflorescence| leaf| meristem| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956678.11e-101ethylene-responsive transcription factor RAP2-13
TrEMBLK3ZVQ31e-100K3ZVQ3_SETIT; Uncharacterized protein
STRINGSi030684m1e-101(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-40ERF family protein