PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof015428

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 198aa MW: 20638.1 Da PI: 10.4486

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-257133727	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.4e-13	25	69	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky Sof015428 25 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 69 6***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.605	18	74	IPR017930	Myb domain
SuperFamily	SSF46689	9.72E-17	20	75	IPR009057	Homeodomain-like
SMART	SM00717	9.3E-11	22	72	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.4E-17	22	72	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-11	25	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-11	25	68	IPR009057	Homeodomain-like
CDD	cd00167	6.68E-11	25	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
GGGGGTHGDK GSSKSAEQER RKGIAWTEDE HRLFLLGLEK YGKGDWRSIS RNFVISRTPT 60 QVASHAQKYF IRLNSMNRER RRSSIHDITS VNNGDASTAQ GPITGQTNGQ AANPGKPSKQ 120 SPQPANTPPG VDAYGTTIGQ PVGGPLVSAV GTPVTLPVSA PPHLAYGMHA PVPGAVVPGA 180 PVNIAPMPYP MPPPSSHG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.2665	0.0	bud\| crown\| inflorescence\| leaf\| meristem\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269\|PubMed:26243618}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448771.1	1e-141	transcription factor SRM1
Swissprot	Q9FNN6	2e-76	SRM1_ARATH; Transcription factor SRM1
TrEMBL	C5YAI2	1e-140	C5YAI2_SORBI; Uncharacterized protein
STRING	Sb06g032880.1	1e-141	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	6e-67	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]