PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015520
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 197aa    MW: 20943.7 Da    PI: 8.0307
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-327133729PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-202171256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
               + +GVr ++ +gr++AeIrdp     r +r++lg+f+t+e+Aa+a++aa+++l+g+
  Sof015520 21 RLRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTPEQAARAYDAAARRLRGP 71
               679******.**********8...2.35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-142070IPR001471AP2/ERF domain
CDDcd000182.80E-162077No hitNo description
PROSITE profilePS5103222.9852178IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-212178IPR016177DNA-binding domain
SMARTSM003805.0E-302184IPR001471AP2/ERF domain
PRINTSPR003671.1E-92233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-292378IPR001471AP2/ERF domain
PRINTSPR003671.1E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAPKRSSEER AAAEEEREQP RLRGVRKRPW GRYAAEIRDP ARKARVWLGT FDTPEQAARA  60
YDAAARRLRG PRATTNYSYP DAVAVPAPPC TAPAASASCG TESSSSSSRD GDHPLAVTVA  120
VAAPPAPSPS SLDLSLGLFP AMVTAQPYLF LDPMPALAQV APMKREEERS CYSGSSSPSV  180
LGLGLDLNLP PPAEVVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-192377762ATERF1
3gcc_A2e-192377762ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.180820.0crown| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445222.11e-61ethylene-responsive transcription factor 8
TrEMBLC5YIV92e-60C5YIV9_SORBI; Uncharacterized protein
STRINGSb07g006210.14e-61(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.11e-18ERF domain protein 11