PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof015535

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRAS

Protein Properties

Length: 197aa MW: 20345.3 Da PI: 7.1173

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-64932	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	83.8	2.9e-26	47	178	2	139
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++lL e+A a+++g++ +a + La l+ a+++gd+ qRl+a+++ AL++r+ r +++ p+++ +e s+++ a +l++++sP+++++ +a a Sof015535 47 RQLLSEAAVAIAEGHHDAAATHLAALKRAANQHGDAEQRLIAMMVDALSSRIRR-----AASAPAQHLAELCSDDQRAGSQLLQDISPCFRVALHAASVA 141 689*************************************************.....5566667776666888989999*************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegp 139 I+eav ++++H++Dfd+s Q +aL++ La+R+ + Sof015535 142 IVEAVGDHRAIHVVDFDVSL-SQHAALIHDLADRRVQG 178 **************98.69********98554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	19.1	20	197	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-23	47	178	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
XPSPGLPAAA TPNNNNVGMT RSPSNSSSST ASSSASCSPP TPGAASRQLL SEAAVAIAEG 60 HHDAAATHLA ALKRAANQHG DAEQRLIAMM VDALSSRIRR AASAPAQHLA ELCSDDQRAG 120 SQLLQDISPC FRVALHAASV AIVEAVGDHR AIHVVDFDVS LSQHAALIHD LADRRVQGKS 180 LESHPPLPTR ALPVLGX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448375.1	9e-84	scarecrow-like protein 8 isoform X1
TrEMBL	C5YEH2	2e-82	C5YEH2_SORBI; Uncharacterized protein
STRING	Sb06g026240.1	4e-83	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	4e-12	SCARECROW-like 8