PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015840
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 194aa    MW: 20643.9 Da    PI: 10.6851
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17372313PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.57.3e-101283259
               ---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY 32 CpvkkkversaedpkvveitYegeHnhe 59
               C+v+k+ver+++d k v++tYeg+Hnhe
  Sof015840  1 CSVRKHVERASHDLKSVITTYEGKHNHE 28
               ***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.306130IPR003657WRKY domain
PfamPF031061.3E-5128IPR003657WRKY domain
SuperFamilySSF1182902.75E-6130IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-9130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
CSVRKHVERA SHDLKSVITT YEGKHNHEVP AARNSGQGSS GSGSAPSAPQ AGGSHRRQEP  60
AQASFAHFGT ASPFSSFGLP PSGQLGPTTG NFRFGMVPPG MTIPMPSLRS LAPTKMVGNS  120
SSMQGYPGLM MPGEPKVEPV SQPLFPMANA SPPAYQQILS RPPFGHQMXI IKKRKRDRFA  180
SACIHDSDAA TWLX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.148070.0meristem| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462550.23e-97probable WRKY transcription factor 2
RefseqXP_021310344.13e-97probable WRKY transcription factor 2
SwissprotQ9FG773e-18WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1B6QD737e-96A0A1B6QD73_SORBI; Uncharacterized protein
STRINGSb02g027950.12e-96(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-17WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]