PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof015874

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bZIP

Protein Properties

Length: 193aa MW: 20817.9 Da PI: 9.7129

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-50932	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.7	1.6e-15	132	181	4	53
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 ++r+rr++kNRe+A rsR+R++a++ eLe + ++L eN++L+k+ +el+ Sof015874 132 SRRQRRMIKNRESAARSRARRQAYTNELELELEQLRRENEMLIKRHQELN 181 79*******************************************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.0E-13	124	182	No hit	No description
SMART	SM00338	3.7E-9	129	193	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.254	131	181	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-10	133	181	No hit	No description
Pfam	PF00170	3.2E-13	133	181	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	136	151	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MEEVWKDYMS LQPSLISITP AADAGGGGGA LYNHRHHQHL SPSGAGASHS PRSFSSPLQP 60 PTPPPPTTLS LSSTLEFTYL GGAGAGGGGG SSTSGDDSRD LMAFSFAPAD QYQQRYQTMK 120 QSSSSAAAAG DSRRQRRMIK NRESAARSRA RRQAYTNELE LELEQLRREN EMLIKRHQEL 180 NVRLATSSSA QGP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.18777	1e-101	inflorescence\| leaf\| meristem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002453116.2	3e-68	bZIP transcription factor 27
TrEMBL	C5XRG8	8e-67	C5XRG8_SORBI; Uncharacterized protein
STRING	Sb04g000300.1	1e-62	(Sorghum bicolor)