PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof015998
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 192aa    MW: 22119.2 Da    PI: 10.4754
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17372477PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.5e-172369148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEde l +av    g++Wk+Ia+ ++  Rt+ qc +rwqk+l
        Sof015998 23 KGGWTLEEDETLRNAVYACEGKNWKKIAQSFP-DRTAVQCLHRWQKVL 69
                     688*****************************.************986 PP
2Myb_DNA-binding60.63.3e-1975121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++++ vk++G+  W+ Iar +  gR +kqc++rw+++l
        Sof015998  75 KGPWTKEEDDIIINMVKKHGPQKWSVIARSLD-GRIGKQCRERWHNHL 121
                      79******************************.*************97 PP
3Myb_DNA-binding56.85e-18127170146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE+   +da++++G++ W+ Ia+ ++ gRt++++k++w++
        Sof015998 127 KKPWTVEEEYVVADAHRLHGNK-WAEIAKLLP-GRTDNSIKNHWNS 170
                      689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0691869IPR017930Myb domain
SMARTSM007172.7E-132271IPR001005SANT/Myb domain
PfamPF002498.1E-152369IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-162479IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-222582IPR009057Homeodomain-like
CDDcd001673.27E-112669No hitNo description
PROSITE profilePS5129430.88670125IPR017930Myb domain
SuperFamilySSF466898.11E-3272168IPR009057Homeodomain-like
SMARTSM007179.8E-1774123IPR001005SANT/Myb domain
PfamPF002492.4E-1775121IPR001005SANT/Myb domain
CDDcd001674.42E-1477121No hitNo description
Gene3DG3DSA:1.10.10.604.3E-2683126IPR009057Homeodomain-like
PROSITE profilePS5129420.269126176IPR017930Myb domain
SMARTSM007171.9E-15126174IPR001005SANT/Myb domain
PfamPF002493.8E-16127170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-23127176IPR009057Homeodomain-like
CDDcd001671.20E-10129172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVFSPADSVS GRRRTNGPVR RAKGGWTLEE DETLRNAVYA CEGKNWKKIA QSFPDRTAVQ  60
CLHRWQKVLN PELIKGPWTK EEDDIIINMV KKHGPQKWSV IARSLDGRIG KQCRERWHNH  120
LDPQINKKPW TVEEEYVVAD AHRLHGNKWA EIAKLLPGRT DNSIKNHWNS SLRKRLGDYK  180
ASSTAPVSVH MV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-70221765159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-70221765159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.227210.0meristem| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and spikes. {ECO:0000269|PubMed:17293435}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809062.11e-120transcription factor MYB3R-2-like isoform X1
SwissprotQ0JHU71e-95MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A2S3HBG51e-119A0A2S3HBG5_9POAL; Uncharacterized protein
TrEMBLA0A3L6R5F01e-119A0A3L6R5F0_PANMI; Myb-related protein A-like
STRINGSi021484m1e-118(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-94myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]