PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof016032

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NAC

Protein Properties

Length: 191aa MW: 21276.8 Da PI: 10.3726

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-50483	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108	1.1e-33	2	77	54	129
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ ++ lvg+kktLvfy+grap+g kt Wvmheyrle Sof016032 2 GEKEWYFFCHKDRKYPTGMRTNRATASGYWKATGKDKEIFRGHRVLVGMKKTLVFYTGRAPRGGKTPWVMHEYRLE 77 579************************************99999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.014	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	6.8E-38	2	100	IPR003441	NAC domain
Pfam	PF02365	1.9E-16	6	76	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MGEKEWYFFC HKDRKYPTGM RTNRATASGY WKATGKDKEI FRGHRVLVGM KKTLVFYTGR 60 APRGGKTPWV MHEYRLEGSL PSNLRRGAKD EWAVCKVFNK DLAAKAGQMA PLHAVGGGME 120 RSDSLAFLDD LVLDNADLPP LIDSPYADAG LIVDYNKSAV GGASNFLVRR GGHERKGXVT 180 KSSRERRATT X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-31	1	105	68	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-31	1	105	68	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-31	1	105	68	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-31	1	105	68	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-31	1	105	71	173	NAC domain-containing protein 19
3swm_B	2e-31	1	105	71	173	NAC domain-containing protein 19
3swm_C	2e-31	1	105	71	173	NAC domain-containing protein 19
3swm_D	2e-31	1	105	71	173	NAC domain-containing protein 19
3swp_A	2e-31	1	105	71	173	NAC domain-containing protein 19
3swp_B	2e-31	1	105	71	173	NAC domain-containing protein 19
3swp_C	2e-31	1	105	71	173	NAC domain-containing protein 19
3swp_D	2e-31	1	105	71	173	NAC domain-containing protein 19
4dul_A	2e-31	1	105	68	170	NAC domain-containing protein 19
4dul_B	2e-31	1	105	68	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461233.1	1e-106	NAC domain-containing protein 79
Swissprot	Q9FK44	1e-55	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A097C0P6	1e-109	A0A097C0P6_9POAL; NAC11
STRING	Sb02g043270.1	1e-106	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	5e-58	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]