PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016036
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HB-other
Protein Properties Length: 191aa    MW: 21633.6 Da    PI: 9.9938
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-573133728PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-192683457
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++t+eq+e+Le+++ ++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Sof016036 26 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 83
               6789****************************************************97 PP
2bZIP_120.11.4e-06771181859
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v++l
  Sof016036  77 RRCREKQRKESSRLQTVNRKLSAMNKLLMEENDRLQKQVSRL 118
                9**************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1432084IPR001356Homeobox domain
SMARTSM003891.3E-142288IPR001356Homeobox domain
CDDcd000865.43E-142585No hitNo description
SuperFamilySSF466894.71E-172586IPR009057Homeodomain-like
PfamPF000469.8E-172683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-192783IPR009057Homeodomain-like
CDDcd146864.42E-477116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAMVASRERR LSPGAAAAPQ VDAGKYVRYT PEQVEALERV YSECPKPSSL RRQQLIRDCP  60
ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLSAM NKLLMEENDR LQKQVSRLVF  120
DNGYMKNRLH SPSVATTDTS CESVVTSGQH NQQQNPAVLH PPQRDANNPA GLLAIAEETW  180
PEFMSTATGT A
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443548.11e-124homeobox-leucine zipper protein HOX33
SwissprotA2ZMN91e-110HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM961e-110HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLC5YRY31e-122C5YRY3_SORBI; Uncharacterized protein
STRINGSb08g021350.11e-123(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.14e-94HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]