PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016044
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 191aa    MW: 20570.9 Da    PI: 9.8598
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-692133731PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-061940426
               ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
               + C++f++ G Ck+Gd C  aHg
  Sof016044 19 AACPDFRK-GGCKRGDACELAHG 40
               78******.*********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-41541IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.8731642IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-41940IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-42042IPR000571Zinc finger, CCCH-type
SMARTSM00356275073IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.7515074IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
HPGEKARRRD PRRYHYSGAA CPDFRKGGCK RGDACELAHG VFECWLHPSR YRTQPCKDGT  60
GCRRRVCFFA HTPDQLRMLP PQQQPSASPR GAAAAASPLA ESYDGSPLRR QAFESYLTKS  120
GMIMSSSPTS TLVSPPRSPP SESSPPMSPD ALRRGSWPAG GGSPVNEGLG SLRQLRLGGG  180
GGXCEIAPFG W
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.99753e-91bud| callus| crown| inflorescence| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in leaf and panicles, but is down-regulated during natural leaf senescence, panicle development and pollination. {ECO:0000269|PubMed:16778011}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440755.11e-99zinc finger CCCH domain-containing protein 35
SwissprotQ9FU271e-83C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0A9E0J02e-98A0A0A9E0J0_ARUDO; Uncharacterized protein
STRINGSb09g006050.16e-99(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.25e-47C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]