 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sof016124 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
C2H2 |
| Protein Properties |
Length: 190aa MW: 20210.4 Da PI: 4.6573 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-71847 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.7 | 9.2e-05 | 165 | 187 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C+k+F++ + L+ H + H
Sof016124 165 PCKSCSKTFNSEMALHAHSKAkH 187
6*****************88777 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 190 aa
Download sequence Send
to blast |
XREWAIPVIK ENCKTDGKEQ KSQEKAIAAP SKSSLVSKKS KDDDDSDEDE TDDSDEDDTD 60
DSDEGEGLSP EEGDDDDSSD EDDTSDDEEE TPTPKKPEAG KKRPAENSLT PLSDKKAKVA 120
TPSAQKTGGK KGAVHVATPH PAKGKTPANN DKSKEKSPKS GGSVPCKSCS KTFNSEMALH 180
AHSKAKHGAK
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.291 | 0.0 | bud| inflorescence| leaf| meristem| root| seed| stem |
| Functional Description ? help
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| Source |
Description |
| UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
