PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof016141

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Protein Properties

Length: 190aa MW: 20991.5 Da PI: 9.9601

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17296970	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.7	2.1e-13	77	167	4	98
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 +l +s+v++ ++v+p++ a ++++ ++ + +grsWe+++ + +++ l++GW+ F+ +n+Lk gD +vF+l g+ ++ ++v+v+r Sof016141 77 ILCKSHVHQPFQVVVPRSLAPFLP---ATTVPAKV-TWHGRSWEMRF--TXGRQIQRLEAGWRXFALDNDLKLGDGCVFELLdGKaEGVVFKVQVLR 167 567788888888899988885543...22222332.2699*****..88888899*********************55266666666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.7E-16	71	168	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.73E-16	71	168	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.70E-14	72	167	No hit	No description
PROSITE profile	PS50863	12.041	74	169	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.3E-11	76	164	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
XRVLQESKSL RRPSRKAWLA NEVLMNKGKS VAMMSSPGHS GGESPADGAD PRPMSETPGA 60 MQSGVLPLLG KPYFTCILCK SHVHQPFQVV VPRSLAPFLP ATTVPAKVTW HGRSWEMRFT 120 XGRQIQRLEA GWRXFALDND LKLGDGCVFE LLDGKAEGVV FKVQVLRAHI PEEIRERAGG 180 YTSFTPILID

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.15509	0.0	bud\| inflorescence\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319641.1	1e-104	B3 domain-containing protein Os04g0386900
Swissprot	Q7XLP4	9e-65	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	A0A1B6PKA3	1e-102	A0A1B6PKA3_SORBI; Uncharacterized protein
STRING	GRMZM2G126194_P01	2e-87	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-07	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]