PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016204
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 189aa    MW: 19625 Da    PI: 9.7356
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-35956PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14.1e-10155179126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+ C +f + G C++G++C+FaHg
  Sof016204 155 FKTKMCENFTK-GSCSFGNKCHFAHG 179
                69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.592114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-6116IPR000571Zinc finger, CCCH-type
SMARTSM003223.1E-856126IPR004087K Homology domain
PROSITE profilePS5008414.23657121IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.6E-1457125IPR004088K Homology domain, type 1
PfamPF000135.4E-1059123IPR004088K Homology domain, type 1
SuperFamilySSF547911.4E-1359151IPR004088K Homology domain, type 1
CDDcd001058.54E-1359121No hitNo description
Gene3DG3DSA:4.10.1000.102.5E-16152186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-9154185IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6154180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.22154181IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-7155179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
CKWGAKCHFA HGERELGKXM LMDSYMPPPM GPRPTGHFAP PPMANLGLAT PASFGASATA  60
KISVDASLAG GIIGRGGVHT KQISRVTGAK LAIRDHESDS SLKNIELEGT FDQIRNASAM  120
VSELIVSISG NAPSQAKNPA GGTHRGSGGG TGSNFKTKMC ENFTKGSCSF GNKCHFAHGD  180
NELRKPAAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.55060.0callus| inflorescence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451712.11e-113zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-98C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A194YNB71e-113A0A194YNB7_SORBI; Uncharacterized protein
STRINGSb04g006450.11e-113(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-46C3H family protein