PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016213
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 189aa    MW: 21169.6 Da    PI: 6.5928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-6045PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.78.3e-18101387127
        NAM   7 FhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlskk 96 
                F P  +el+ ++L+ k++g++l+++ +  ++++diy+++P  L +      + k+e+++w+fF++ + k++t++rk+r+++   g+W++    ++vl+ +
  Sof016213  10 FTP--SELL-CFLRLKIAGEPLPATAAahFHDADIYTADPALLATlfdpapEKKGESSSWFFFTHVRPKSSTDSRKSRQVAggVGTWHSERAPRRVLDDE 106
                655..4788.89*********665442249*************755778765566777********************66623678************** PP

        NAM  97 gelvglkktLvfy.kgrapkgektdWvmheyr 127
                g+ +g  + + +  k  ++ +e+t+W m e++
  Sof016213 107 GNCTGHSQYFSYKlKIGKNCSERTEWYMLEFS 138
                ************9555778889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.3532163IPR003441NAC domain
SuperFamilySSF1019413.27E-209162IPR003441NAC domain
PfamPF023651.6E-810138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MHPPPGDCSF TPSELLCFLR LKIAGEPLPA TAAAHFHDAD IYTADPALLA TLFDPAPEKK  60
GESSSWFFFT HVRPKSSTDS RKSRQVAGGV GTWHSERAPR RVLDDEGNCT GHSQYFSYKL  120
KIGKNCSERT EWYMLEFSDG QEADHERVHG GEPQLVLCNI YKAXYPFAPQ QRIHVDTVIL  180
CITAQEGRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.6440.0meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303467.17e-99uncharacterized protein LOC8077939
TrEMBLA0A1Z5R2B43e-96A0A1Z5R2B4_SORBI; Uncharacterized protein
STRINGSb09g018837.19e-97(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.21e-07NAC domain containing protein 61