PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof016280

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NAC

Protein Properties

Length: 188aa MW: 21802 Da PI: 9.9243

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-118089	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.7	1.1e-53	12	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lp GfrFhPtdeelv++yLk k++g+ +++++vi+e+d++k+ePwdLp k +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ ++sk Sof016280 12 LPLGFRFHPTDEELVTHYLKGKITGQINSENQVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRIIKSKgdk 111 699**********************999999**********96446677888**********************************9887 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++g+kktLvf++grapkge+t W+mheyr Sof016280 112 rKQHTIGMKKTLVFHRGRAPKGERTGWIMHEYRT 145 77777*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-57	5	152	IPR003441	NAC domain
PROSITE profile	PS51005	54.867	12	163	IPR003441	NAC domain
Pfam	PF02365	5.6E-29	13	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MAKAAVMELR TLPLGFRFHP TDEELVTHYL KGKITGQINS ENQVIPEIDV CKCEPWDLPD 60 KSLIRSDDPE WFFFAPKDRK YPNGSRSNRA TEAGYWKATG KDRIIKSKGD KRKQHTIGMK 120 KTLVFHRGRA PKGERTGWIM HEYRTTEPEF SPASRVVCFL SAFPEQEEKT GRPPQRKVLE 180 WLLTYSFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-48	11	148	19	148	NAC domain-containing protein 19
3swm_B	9e-48	11	148	19	148	NAC domain-containing protein 19
3swm_C	9e-48	11	148	19	148	NAC domain-containing protein 19
3swm_D	9e-48	11	148	19	148	NAC domain-containing protein 19
3swp_A	9e-48	11	148	19	148	NAC domain-containing protein 19
3swp_B	9e-48	11	148	19	148	NAC domain-containing protein 19
3swp_C	9e-48	11	148	19	148	NAC domain-containing protein 19
3swp_D	9e-48	11	148	19	148	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.8528	0.0	inflorescence\| meristem\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269\|PubMed:18443413}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269\|PubMed:17158162}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:18443413}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250\|UniProtKB:Q949N0}.
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, heat and drought stresses. {ECO:0000269\|PubMed:17158162}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445085.1	1e-104	protein NTM1-like 9 isoform X2
Refseq	XP_021320654.1	1e-104	protein NTM1-like 9 isoform X1
Swissprot	B5X570	7e-64	NAC14_ARATH; NAC domain-containing protein 14
Swissprot	F4JN35	4e-65	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A1Z5R899	1e-103	A0A1Z5R899_SORBI; Uncharacterized protein
TrEMBL	C5YHA7	1e-103	C5YHA7_SORBI; Uncharacterized protein
STRING	Sb07g003900.1	1e-104	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-67	NAC transcription factor-like 9

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]