PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016369
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 187aa    MW: 22005.2 Da    PI: 10.1072
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-60287PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-0676101123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++C+  +C++ F++k +L +H ++ +
  Sof016369  76 FECNidYCHMAFKTKAELAVHKKNmC 101
                89*******************99866 PP
2zf-C2H211.70.00077101123323
                ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                C+   C+k+F+++ +L+rH++ H
  Sof016369 101 CTvnSCNKHFRSHRYLRRHQSAH 123
                77779***************988 PP
3zf-C2H2110.0013129153123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ykCp  dC++ F+ + +   H ++H
  Sof016369 129 YKCPwdDCNMAFKWSWDRAEHFKVH 153
                9************999999998887 PP
4zf-C2H214.88.2e-05159183123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ykC+   C+k F+  s+++rH r++
  Sof016369 159 YKCTtpGCSKIFKFVSDFTRHRRRC 183
                99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355207698IPR015880Zinc finger, C2H2-like
SMARTSM003551.799123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.26199128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-4100123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280101123IPR007087Zinc finger, C2H2
SuperFamilySSF576672.15E-10115157No hitNo description
Gene3DG3DSA:3.30.160.602.3E-10124150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0042129153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.385129158IPR007087Zinc finger, C2H2
PROSITE patternPS000280131153IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-8148182No hitNo description
Gene3DG3DSA:3.30.160.603.6E-9151181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035522159181IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933159187IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
XRTGKRKLEL LEVKKENIDL EDGVICEKEE TLVRSDRCES VLSTAGSINV KLADIKKDLM  60
DNSAASKVKK MKRNRFECNI DYCHMAFKTK AELAVHKKNM CTVNSCNKHF RSHRYLRRHQ  120
SAHNNDMPYK CPWDDCNMAF KWSWDRAEHF KVHAGVKPYK CTTPGCSKIF KFVSDFTRHR  180
RRCKPQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-407618223129Lysine-specific demethylase REF6
6a58_A1e-407618223129Lysine-specific demethylase REF6
6a59_A1e-407618223129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874KKMKRNR
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465852.11e-130Krueppel-like factor 12 isoform X2
SwissprotQ10RP41e-43SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLC5WXX21e-129C5WXX2_SORBI; Uncharacterized protein
STRINGSb01g047010.11e-129(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.18e-41relative of early flowering 6