PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016385
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 187aa    MW: 20819.1 Da    PI: 9.4477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-923PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18114163255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeI+dp     +  r++lg+f ++eeAa+a++a ++k+ g
  Sof016385 114 QYRGIRQRP-WGKWAAEIKDPQ----KgVRVWLGTFNSPEEAARAYDAEARKISG 163
                6********.**********94....35**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.377114171IPR001471AP2/ERF domain
CDDcd000181.55E-24114173No hitNo description
Gene3DG3DSA:3.30.730.106.7E-28114171IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-19114167IPR016177DNA-binding domain
SMARTSM003801.1E-29114177IPR001471AP2/ERF domain
PfamPF008475.7E-12115160IPR001471AP2/ERF domain
PRINTSPR003674.1E-11115126IPR001471AP2/ERF domain
PRINTSPR003674.1E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MCGGAILDDL REPEPRRVTD RDIWQKKKPK RGGGGGRRSF AAEDDEDFEA DFEHFEADSS  60
DSDFELGEGA DDDVVEIKPF AAKGTFSRDG LSTMTTANYD APVARSAKRK RKNQYRGIRQ  120
RPWGKWAAEI KDPQKGVRVW LGTFNSPEEA ARAYDAEARK ISGKKAKGKL PDAPPVGHKR  180
RSGSNFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-16114171260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-16114171563ATERF1
3gcc_A3e-16114171563ATERF1
5wx9_A9e-161141771478Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.179170.0bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148691.11e-109uncharacterized protein LOC100282307
SwissprotQ6K7E62e-62ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A3L6F8851e-108A0A3L6F885_MAIZE; Ethylene-responsive transcription factor 1
TrEMBLB4G1H01e-108B4G1H0_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G018398_P011e-108(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.12e-26related to AP2 2
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]