PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016417
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 187aa    MW: 20555.4 Da    PI: 10.9497
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17453383PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-174491148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
        Sof016417 44 RGSWTPQEDMRLIAYIQKHGHSNWRALPKQAGLLRCGKSCRLRWINYL 91
                     89******************************99************97 PP
2Myb_DNA-binding537.9e-1797142148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
        Sof016417  97 RGSFTAEEEETIIRLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 142
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3923991IPR017930Myb domain
SuperFamilySSF466891.57E-3041138IPR009057Homeodomain-like
SMARTSM007174.9E-134393IPR001005SANT/Myb domain
PfamPF002498.3E-164491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-244598IPR009057Homeodomain-like
CDDcd001671.21E-104691No hitNo description
PROSITE profilePS5129425.05592146IPR017930Myb domain
SMARTSM007171.7E-1496144IPR001005SANT/Myb domain
PfamPF002493.0E-1597142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2799146IPR009057Homeodomain-like
CDDcd001674.19E-1199142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
XIIQPEPGSR DRLKLRRTKN TQGQTGRGMG RGRAPCCAKV GLNRGSWTPQ EDMRLIAYIQ  60
KHGHSNWRAL PKQAGLLRCG KSCRLRWINY LRPDLKRGSF TAEEEETIIR LHGLLGNKWS  120
KIAACLPGRT DNEIKNVWNT HLKKKVAPRE KQXAGAADKN DGAASGDAGT PATAASXSAX  180
SSTTTHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-294214625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.176130.0inflorescence| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452709.17e-92myb-related protein Zm1
SwissprotP200243e-90MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A291FGK92e-97A0A291FGK9_MISSI; Secondary cell wall MYB 4
STRINGSb04g031110.13e-91(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-64myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]