PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016537
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 185aa    MW: 20464.2 Da    PI: 9.0447
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-91792PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
        Sof016537 17 KGLWSPEEDEKLYNHIIRHGVGCWSSVPKLAGLQRCGKSCRLRWINYL 64
                     678*******************************************97 PP
2Myb_DNA-binding53.84.5e-1770114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++ 
        Sof016537  70 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 114
                      899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6221264IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-241267IPR009057Homeodomain-like
SuperFamilySSF466892.1E-2914111IPR009057Homeodomain-like
SMARTSM007172.3E-121666IPR001005SANT/Myb domain
PfamPF002494.1E-151764IPR001005SANT/Myb domain
CDDcd001673.42E-122064No hitNo description
PROSITE profilePS5129426.03865119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2668119IPR009057Homeodomain-like
SMARTSM007172.5E-1669117IPR001005SANT/Myb domain
PfamPF002492.8E-1570114IPR001005SANT/Myb domain
CDDcd001672.50E-1272112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRLSCGGGG VQPKLRKGLW SPEEDEKLYN HIIRHGVGCW SSVPKLAGLQ RCGKSCRLRW  60
INYLRPDLKR GSFSQQEEDL IVALHEILGN RWSQIASHLP GRTDNEIKNF WNSCLKKKLR  120
QRGIDPATHK PISVDADSEA GAAVPDARDH DRKPGGADAD GLAQSKQQQP AAAVFDPFPV  180
TDFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-291111921128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120LKKKLRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.103301e-160crown| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961344.11e-113myb-related protein Hv33
SwissprotP200272e-88MYB3_HORVU; Myb-related protein Hv33
TrEMBLK3Z8601e-112K3Z860_SETIT; Uncharacterized protein
STRINGSi022730m1e-113(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-76myb domain protein 86