PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016547
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family Dof
Protein Properties Length: 185aa    MW: 19705.7 Da    PI: 7.3055
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17289791PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof106.41.5e-33103156255
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr 55 
                ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt GGa+rnv  Gg +
  Sof016547 103 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTGGGAMRNVARGGPA 156
                78999*******************************************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2599154IPR003851Zinc finger, Dof-type
PfamPF027012.4E-28104156IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.096107161IPR003851Zinc finger, Dof-type
PROSITE patternPS013610109145IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MIAECQGGGG GDFLIKLFGK TIPVPESGDA KDLQQSSSSS SWTEQDQDAH ALENARGDAP  60
AQPDSSEPSP QPEVVDAEDP KSSPETHQKP GDAASQREKL KKPDKVLPCP RCNSMDTKFC  120
YFNNYNVNQP RHFCKNCQRY WTGGGAMRNV ARGGPADART KNAVGGLELS SRGTGRAGLL  180
RGGGA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.112860.0inflorescence| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464638.13e-84cyclic dof factor 1
SwissprotQ93ZL56e-33CDF2_ARATH; Cyclic dof factor 2
TrEMBLC5WM757e-83C5WM75_SORBI; Uncharacterized protein
STRINGSb01g022330.11e-83(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-34cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]